Relaxed phylogenetics and dating with confidence 2016

Relaxed phylogenetics and dating with confidence 2016

(2012) searching for ancestral areas and artifactal centers of origin in biogeography with comment on east-west patterns across southern australia. time-structured data to estimate evolutionary rates of double-stranded dna viruses. takes a relaxed random walk in continuous space and time., the world’s most sclerophyllous genus, arose in southwestern australian heathland and diversified throughout australia over the last 12 million years.

Relaxed phylogenetics and dating with confidence drummond

g, carvalho lm, trevor bedford, andrew j tatem, guy baele, nuno faria, daniel park, jason ladner, armando arias, danny asogun, filip bielejec, sarah caddy, matt cotten, jonathan dambrozio, simon dellicour, antonino di caro, joseph diclaro, sophie duraffour, mike elmore, lawrence fakoli, merle gilbert, sahr m gevao, stephen gire, adrianne gladden-young, andreas gnirke, augustine goba, donald grant, bart haagmans, julian hiscox, umaru jah, brima kargbo, jeffrey kugelman, di liu, jia lu, christine malboeuf, suzanne mate, david matthews, christian matranga, luke meredith, james qu, joshua quick, susan pas, my phan, georgios poliakis, chantal reusken, mariano sanchez-lockhart, stephen schaffner, john schieffelin, rachel sealfon, etienne simon-loriere, saskia smits, kilian stoecker, lucy thorne, ekaete alice tobin, mohamed vandi, simon watson, kendra west, shannon whitmer, michael wiley, sarah winnicki, shirlee wohl, roman wölfel, nathan yozwiak, kristian andersen, sylvia blyden, fatorma bolay, bernice dahn, miles carroll, boubacar diallo, pierre formenty, christophe fraser, george gao, robert garry, ian goodfellow, stephan günther, christian happi, edward holmes, brima kargbo, paul kellam, marion koopmans, nicholas loman, n'faly magassouba, dhamari naidoo, stuart nichol, tolbert nyenswah, gustavo palacios, oliver pybus, pardis sabeti, amadou sall, keïta sakoba, ute ströeher, isatta wurie, marc suchard, philippe lemey & rambaut a (2016) biorxiv 071779.| improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. a, lam tt, carvalho lm & pybus og (2016) virus evolution 2, vew007. md, woolhouse mej & rambaut a (2016) revue scientifique et technique-office international des epizooties 35, 287-296.

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Relaxed phylogenetics and dating with confidence plos biology

inferences from tree shape: numbers of missing taxa and population growth rates. hybridizations between ancient brown and polar bears and an irish origin for the modern polar bear matriline. there is no evidence of a centre of origin and diversification of the genus is older than the mid-miocene, being at least oligocene, and probably older, although calibration points for molecular dating are too far removed from the ingroup to provide any great confidence in the methodology.(2004) the southwest australian floristic region: evolution and conservation of a global hotspot of biodiversity.

Relaxed Phylogenetics and Dating with Confidence

The phylogeny of brown lacewings (Neuroptera: Hemerobiidae

(2015) fossil evidence for open, proteaceae-dominated heathlands and fire in the late cretaceous of australia. on "mutation rate and genotype variation of ebola virus from mali case sequences". in ‘plant life on the sandplains in southwest australia, a global diversity hotpsot’. genes are common throughout the genus rickettsia and are transmitted horizontally.

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Publications

(2015) seed size, fecundity and post-fire regeneration strategy are interdependent in hakea.| fossil evidence for open, proteaceae-dominated heathlands and fire in the late cretaceous of australia. g, suchard ma, rambaut a & lemey p (2016) systematic biology in press. h, weston ph, anderson cl, barker np, cantrill dj, mast ar, savolainen v.

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Mitogenomics phylogenetic relationships of the current sloth's

| searching for ancestral areas and artifactal centers of origin in biogeography with comment on east-west patterns across southern australia. similarly, at the base of clade b is a polytomy of lineages from the swa, ca and ea, with no resolution of area relationships. a comment on hakea and its supposed divergence over the past 12 million years. i, nelson mi, quezada-monroy f, dutta j, cortes-fernández r, lara-puente jh, castro-peralta f, cunha lf, trovão ns, lozano-dubernard b, rambaut a, van bakel h & garcía-sastre a (2016) elife 5, e16777.

Inferences from tip‐calibrated phylogenies: a review and a

: a common application programming inferface and high-performance computing library for statistical phylogenetics.| the southwest australian floristic region: evolution and conservation of a global hotspot of biodiversity. nature methods 9, 772| jmodeltest 2: more models, new heuristics and parallel computing. consideration should be given to the possibility of vicariance of multiple, widespread ancestral lineages as an explanation for lineages now disjunct between ea and swa.

CSIRO PUBLISHING | Australian Systematic Botany

phylogenetics and the palaeoptera problem: resolving deep ancestral splits in the insect phylogeny. genomes reveal the factors that spread and sustained the west african ebola epidemic. these two groups together are sister to a large, mostly unresolved clade of swa, ca and ea taxa. aj, rambaut a & shapiro b and pybus og (2005) mol biol evol 22, 1185-1192.

Relaxed phylogenetics and dating with confidence.

Molecular phylogeny, divergence time estimates and historical

(2016) concluded that the australian sclerophyllous genus hakea (proteaceae) arose 18 million years ago in the south west of western australia (swa) and dispersed 18 times to eastern (ea) and central australia (ca) only 12 million years ago (mid-miocene). f, baele g, vrancken b, suchard ma, rambaut a & lemey p (2016) mol biol evol 33, 2167-2169.| geographic variation in eucalyptus diversifolia and the recognition of new subspecies e. we, lin ae, grubaugh nd, carvalho lm, kim k, kyawe pp, mccauley sm, donnard e, kucukural a, mcdonel p, schaffner sf, garber m, rambaut a, andersen kg, sabeti pc & luban j (2016) cell 167, 1088-1098.

RevBayes: Bayesian Phylogenetic Inference Using Graphical

(1997) geographic variation in eucalyptus diversifolia and the recognition of new subspecies e. plos one 10, e0129027| seed size, fecundity and post-fire regeneration strategy are interdependent in hakea. a, dudas g, carvalho lm, park dj, yozwiak nl, holmes ec & andersen kg (2016) science 353, 658.) million years ago relative to its nearest outgroups, and the age of the divergence of two major clades (a and b) to 24.

Prof Alexei Drummond - The University of Auckland

(2015) paraphyly changes understanding of timing and tempo of diversification in subtribe hakeinae (proteacaeae), a giant australian plant radiation. of the 2009 h1n1 influenza pandemic in swine in mexico.(2012) improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. lel, thiele kr, dodson jr, harvey j (2014) biogeography of kwongan: origins, diversity, endemism and vegetation patterns.

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